5C3D	Transferase	date	Jun 17, 2015
title	Crystal Structure Of Abbb + Udp-C-Gal (Short Soak) + Di
authors	S.Gagnon, P.Meloncelli, R.B.Zheng, O.Haji-Ghassemi, A.R.Johal, S. T.L.Lowary, S.V.Evans
compound		source
Molecule: Histo-Blood Group Abo System Transferase Chain: A Fragment: Unp Residues 64-354 Synonym: Fucosylglycoprotein 3-Alpha-Galactosyltransferase, Fucosylglycoprotein Alpha-N-Acetylgalactosaminyltransferase Glycoprotein-Fucosylgalactoside Alpha-N- Acetylgalactosaminyltransferase,Glycoprotein-Fucosylgalacto Alpha-Galactosyltransferase,Histo-Blood Group A Transferase Transferase,Histo-Blood Group B Transferase,B Transferase,N Ec: 2.4.1.40,2.4.1.37 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Abo Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.197 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.540 149.770 79.270 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.39 Å
ligand	MN, PG0, URM	enzyme	Transferase E.C.2.4.1.40 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	High resolution structures of the human ABO(H) blood group enzymes in complex with donor analogs reveal that the enzymes utilize multiple donor conformations to bind substrates in a step-wise manner., Gagnon SM, Meloncelli PJ, Zheng RB, Haji-Ghassemi O, Johal AR, Borisova SN, Lowary TL, Evans SV, J Biol Chem. 2015 Sep 15. pii: jbc.M115.682401. PMID:26374898

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (5c3d.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 5C3D CSU: Contacts of Structural Units for 5C3D Structure Factors (615 Kb) Retrieve 5C3D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C3D from S2C, [Save to disk] Re-refined 5c3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C3D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C3D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c3d_A] [5c3d] SWISS-PROT database: Domain organization of by SWISSPFAM

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