5C56 Hydrolase date Jun 19, 2015
title Crystal Structure Of Usp7hausp In Complex With Icp0
authors J.Cheng, Z.Li, R.Gong, J.Fang, Y.Yang, C.Sun, H.Yang, Y.Xu
compound source
Molecule: Ubiquitin E3 Ligase Icp0
Chain: B
Fragment: Unp Residues 606-626
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Herpesvirus 1
Organism_common: Hhv-1
Organism_taxid: 10298

Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A
Fragment: Unp Residues 560-1102
Synonym: Deubiquitinating Enzyme 7,Herpesvirus-Associated U Specific Protease,Ubiquitin Thioesterase 7,Ubiquitin-Specif Processing Protease 7;
Ec: 3.4.19.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7, Hausp
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.879 80.378 151.149 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5c56.pdb1.gz) 89 Kb
  • CSU: Contacts of Structural Units for 5C56
  • Structure Factors (411 Kb)
  • Retrieve 5C56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C56 from S2C, [Save to disk]
  • Re-refined 5c56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C56
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c56_B] [5c56_A] [5c56]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5C56
  • Community annotation for 5C56 at PDBWiki (http://pdbwiki.org)

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