5C6P Transport Protein date Jun 23, 2015
title Protein C
authors M.Lu
compound source
Molecule: Protein C
Chain: A
Synonym: Putative Efflux Pump Protein
Engineered: Yes
Organism_scientific: Neisseria Gonorrhoeae (Strain Atcc 700 1090);
Organism_taxid: 242231
Strain: Atcc 700825 Fa 1090
Gene: Ngo0395
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein D
Chain: B
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.280 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.642 117.642 225.989 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand 4YH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • xenobiotic transmembrane tra...


  • Primary referenceStructural basis for the blockade of MATE multidrug efflux pumps., Radchenko M, Symersky J, Nie R, Lu M, Nat Commun. 2015 Aug 6;6:7995. doi: 10.1038/ncomms8995. PMID:26246409
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (5c6p.pdb1.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 5C6P
  • CSU: Contacts of Structural Units for 5C6P
  • Structure Factors (357 Kb)
  • Retrieve 5C6P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C6P from S2C, [Save to disk]
  • Re-refined 5c6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C6P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C6P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c6p_A] [5c6p_B] [5c6p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C6P: [FN3 ] by SMART
  • Other resources with information on 5C6P
  • Community annotation for 5C6P at PDBWiki (http://pdbwiki.org)

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