5C7X Immune System date Jun 25, 2015
title Crystal Structure Of Mor04357, A Neutralizing Anti-Human Gm- Antibody Fab Fragment In Complex With Human Gm-Csf
authors R.Eylenstein, D.Weinfurtner, S.Steidl, J.Boettcher, M.Augustin
compound source
Molecule: Granulocyte-Macrophage Colony-Stimulating Factor
Chain: A, B
Fragment: Unp Residues 18-144
Synonym: Gm-Csf,Colony-Stimulating Factor,Csf,Molgramostin, Sargramostim;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2, Gmcsf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Immunglobulin G1 Fab Fragment, Heavy Chain
Chain: H, M
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Immunglobulin G1 Fab Fragment, Light Chain
Chain: L, N
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.602 97.493 192.512 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand PEG, PG6, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular basis of in vitro affinity maturation and functional evolution of a neutralizing anti-human GM-CSF antibody., Eylenstein R, Weinfurtner D, Hartle S, Strohner R, Bottcher J, Augustin M, Ostendorp R, Steidl S, MAbs. 2015 Sep 25:0. PMID:26406987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (5c7x.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (5c7x.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 5C7X
  • CSU: Contacts of Structural Units for 5C7X
  • Structure Factors (281 Kb)
  • Retrieve 5C7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5C7X from S2C, [Save to disk]
  • Re-refined 5c7x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5C7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5C7X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c7x_L] [5c7x_N] [5c7x] [5c7x_M] [5c7x_B] [5c7x_A] [5c7x_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5C7X: [CSF2] [IG_like] [IGv ] by SMART
  • Other resources with information on 5C7X
  • Community annotation for 5C7X at PDBWiki (http://pdbwiki.org)

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