5C8J	Membrane Protein	date	Jun 25, 2015
title	A Yidc-Like Protein In The Archaeal Plasma Membrane
authors	M.T.Borowska, P.K.Dominik, S.A.Anghel, A.A.Kossiakoff, R.J.Keena
compound		source
Molecule: Antibody Fragment, Heavy Chain Chain: A, C, E, G Engineered: Yes Other_details: Obtained By Phage Display From A Library Of Antibody Fragment; The Cdrs Are Completely Synthetic;		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-Gold(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Rh2.2
Molecule: Antibody Fragment, Light Chain Chain: B, D, F, H Engineered: Yes Other_details: Obtained By Phage Display From A Library Of Antibody Fragment; The Cdrs Are Completely Synthetic;		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-Gold(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Rh2.2
Molecule: Protein Mj0480 Chain: I, J, K, L Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii (Strain 43067 Dsm 2661 Jal-1 Jcm 10045 Nbrc 100440); Organism_taxid: 243232 Strain: Atcc 43067 Dsm 2661 Jal-1 Jcm 10045 Nbrc 10 Atcc: 43067d-5 Gene: Mj0480 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 2	R_factor 0.253 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 180.250 251.420 96.110 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	LMT	enzyme
Gene Ontology	Chain Function Process Component J, K, I, L
Primary reference	A YidC-like Protein in the Archaeal Plasma Membrane., Borowska MT, Dominik PK, Anghel SA, Kossiakoff AA, Keenan RJ, Structure. 2015 Aug 5. pii: S0969-2126(15)00278-6. doi:, 10.1016/j.str.2015.06.025. PMID:26256539

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (801 Kb) [Save to disk] Biological Unit Coordinates (5c8j.pdb1.gz) 200 Kb Biological Unit Coordinates (5c8j.pdb2.gz) 202 Kb Biological Unit Coordinates (5c8j.pdb3.gz) 200 Kb Biological Unit Coordinates (5c8j.pdb4.gz) 201 Kb LPC: Ligand-Protein Contacts for 5C8J CSU: Contacts of Structural Units for 5C8J Structure Factors (881 Kb) Retrieve 5C8J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5C8J from S2C, [Save to disk] Re-refined 5c8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5C8J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5C8J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5c8j_H] [5c8j] [5c8j_F] [5c8j_D] [5c8j_C] [5c8j_E] [5c8j_J] [5c8j_K] [5c8j_A] [5c8j_I] [5c8j_L] [5c8j_G] [5c8j_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5C8J: [DUF106] [IG_like] [IGv ] by SMART

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