5CAW	Signaling Protein	date	Jun 30, 2015
title	Structure Of Pediculus Humanus Parkin Bound To Phospho-Ubiqu
authors	T.Wauer, D.Komander
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Parkin Chain: A, C Fragment: Unp Residues 141-461 Ec: 6.3.2.- Engineered: Yes Other_details: Covalently Modified With Phospho-Ubiquitin A		Organism_scientific: Pediculus Humanus Subsp. Corporis Organism_common: Body Louse Organism_taxid: 121224 Gene: Phum_phum233570 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pokink
Molecule: Polyubiquitin-B Chain: B, D Engineered: Yes Mutation: Yes Other_details: Phosphorylated At Ser65 Gly76 Exchanged With Probe, Bromopropylamine. The Bromide Was Lost During The Co		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.170 44.120 204.531 90.00 92.55 90.00
method	X-Ray Diffraction	resolution	2.62 Å
ligand	3CN, SEP, SO4, ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene	PHUM
Gene Ontology	Chain Function Process Component A, C
Primary reference	Mechanism of phospho-ubiquitin-induced PARKIN activation., Wauer T, Simicek M, Schubert A, Komander D, Nature. 2015 Jul 10. doi: 10.1038/nature14879. PMID:26161729

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk] Biological Unit Coordinates (5caw.pdb1.gz) 117 Kb Biological Unit Coordinates (5caw.pdb2.gz) 122 Kb LPC: Ligand-Protein Contacts for 5CAW CSU: Contacts of Structural Units for 5CAW Structure Factors (1407 Kb) Retrieve 5CAW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CAW from S2C, [Save to disk] Re-refined 5caw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CAW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CAW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5caw_A] [5caw] [5caw_C] [5caw_B] [5caw_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CAW: [IBR] [UBQ ] by SMART

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