5CB1 Transferase date Jun 30, 2015
title Apo Enzyme Of Human Polymerase Lambda
authors M.S.Liu, M.D.Tsai
compound source
Molecule: Dna Polymerase Lambda
Chain: A, B
Fragment: Unp Residues 250-575
Synonym: Pol Lambda,Dna Polymerase Beta-2,Pol Beta2,Dna Pol Kappa;
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poll
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.230 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
205.285 205.285 111.395 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand
enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Mechanism for the Fidelity Modulation of DNA Polymerase lambda., Liu MS, Tsai HY, Liu XX, Ho MC, Wu WJ, Tsai MD, J Am Chem Soc. 2016 Feb 24;138(7):2389-98. doi: 10.1021/jacs.5b13368. Epub 2016, Feb 11. PMID:26836966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5cb1.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (5cb1.pdb2.gz) 40 Kb
  • CSU: Contacts of Structural Units for 5CB1
  • Structure Factors (301 Kb)
  • Retrieve 5CB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CB1 from S2C, [Save to disk]
  • Re-refined 5cb1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5CB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CB1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cb1_A] [5cb1] [5cb1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5CB1: [HhH1] [POLXc ] by SMART
    • Other resources with information on 5CB1
  • Community annotation for 5CB1 at PDBWiki (http://pdbwiki.org)

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