5CCS	Isomerase	date	Jul 02, 2015
title	Human Cyclophilin D Complexed With Inhibitor
authors	R.P.Gibson, E.Shore, N.Kershaw, M.Awais, A.Javed, D.Latawiec, S.Pandalaneni, L.Wen, N.Berry, P.O'Neill, R.Sutton, L.Y.Lian
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase F, Mitochondr Chain: X Fragment: Unp Residues 44-207 Synonym: Ppiase F,Cyclophilin D,Cypd,Cyclophilin F,Mitochon Cyclophilin,Cyp-M,Rotamase F, Human Cyclophilin D; Ec: 5.2.1.8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppif, Cyp3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 21 21 21	R_factor 0.160 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.270 58.700 77.030 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	C4Y	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component X

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (5ccs.pdb1.gz) 27 Kb LPC: Ligand-Protein Contacts for 5CCS CSU: Contacts of Structural Units for 5CCS Structure Factors (170 Kb) Retrieve 5CCS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CCS from S2C, [Save to disk] Re-refined 5ccs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CCS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CCS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ccs_X] [5ccs] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5CCS

Community annotation for 5CCS at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---