5CEQ Transferase Transferase Inhibitor date Jul 07, 2015
title Dlk In Complex With Inhibitor 2-((1-Cyclopentyl-5-(1-(Oxetan Piperidin-4-Yl)-1h-Pyrazol-3-Yl)Amino)Isonicotinonitrile
authors S.F.Harris, J.Yin
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 12
Chain: A
Fragment: Kinase Domain (Unp Residues 115-402)
Synonym: Dual Leucine Zipper Bearing Kinase,Dlk,Leucine-Zip Protein Kinase,Zpk,Mapk-Upstream Kinase,Muk,Mixed Lineage K
Ec: 2.7.11.25
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k12, Zpk
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Hi5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.169 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.404 39.223 59.815 90.00 104.80 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand 50F enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceScaffold-Hopping and Structure-Based Discovery of Potent, Selective, And Brain Penetrant N-(1H-Pyrazol-3-yl)pyridin-2-amine Inhibitors of Dual Leucine Zipper Kinase (DLK, MAP3K12)., Patel S, Harris SF, Gibbons P, Deshmukh G, Gustafson A, Kellar T, Lin H, Liu X, Liu Y, Liu Y, Ma C, Scearce-Levie K, Ghosh AS, Shin YG, Solanoy H, Wang J, Wang B, Yin J, Siu M, Lewcock JW, J Med Chem. 2015 Oct 2. PMID:26431428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5ceq.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5CEQ
  • CSU: Contacts of Structural Units for 5CEQ
  • Structure Factors (386 Kb)
  • Retrieve 5CEQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CEQ from S2C, [Save to disk]
  • Re-refined 5ceq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5CEQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5CEQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ceq_A] [5ceq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5CEQ: [STYKc ] by SMART
  • Other resources with information on 5CEQ
  • Community annotation for 5CEQ at PDBWiki (http://pdbwiki.org)

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