5CPV Calcium Binding date Jan 24, 1990
title Restrained Least Squares Refinement Of Native (Calcium) And Substituted Carp Parvalbumin Using X-Ray Crystallographic D 1.6-Angstroms Resolution
authors A.L.Swain, R.H.Kretsinger, E.L.Amma
compound source
Molecule: Calcium-Binding Parvalbumin B
Chain: A
Engineered: Yes
 Organism_scientific: Cyprinus Carpio
Organism_common: Common Carp
Organism_taxid: 7962
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.700 60.610 54.350 90.00 94.60 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ACE, CA enzyme
note 5CPV supersedes 1CPV, 2CPV, 3CPV
related structures by homologous chain: 1CDP, 1PAL, 1PVA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRestrained least squares refinement of native (calcium) and cadmium-substituted carp parvalbumin using X-ray crystallographic data at 1.6-A resolution., Swain AL, Kretsinger RH, Amma EL, J Biol Chem 1989 Oct 5;264(28):16620-8. PMID:2777802
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (5cpv.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5CPV
  • CSU: Contacts of Structural Units for 5CPV
  • Likely Quarternary Molecular Structure file(s) for 5CPV
  • Retrieve 5CPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5CPV from S2C, [Save to disk]
    • View 5CPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5CPV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5CPV, from MSDmotif at EBI
  • Genome occurence of 5CPV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5cpv__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5cpv] [5cpv_A]
  • SWISS-PROT database: [P02618]
  • Domain organization of [PRVB_CYPCA] by SWISSPFAM
  • Domain found in 5CPV: [EFh ] by SMART
    • Other resources with information on 5CPV
  • Community annotation for 5CPV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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