5D0Q	Protein Transport	date	Aug 03, 2015
title	Bamacde Complex, Outer Membrane Beta-Barrel Assembly Machine Complex
authors	Y.Gu, N.Paterson, Y.Zeng, H.Dong, W.Wang, C.Dong
compound		source
Molecule: Outer Membrane Protein Assembly Factor Bama Chain: A, F Synonym: Omp85 Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 562 Gene: Bama, Yaet, Yzzn, Yzzy, B0177, Jw0172 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Outer Membrane Protein Assembly Factor Bamc Chain: C, G Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Bamc, Dapx, Nlpb, B2477, Jw2462 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Outer Membrane Protein Assembly Factor Bamd Chain: D, H Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Bamd, Yfio, B2595, Jw2577 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Outer Membrane Protein Assembly Factor Bame Chain: E, I Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Bame, Smpa, B2617, Jw2598 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 42 21 2	R_factor 0.314 R_Free 0.340
crystal cell	length a length b length c angle alpha angle beta angle gamma 254.157 254.157 179.215 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component F, A I, E
Primary reference	Structural basis of outer membrane protein insertion by the BAM complex., Gu Y, Li H, Dong H, Zeng Y, Zhang Z, Paterson NG, Stansfeld PJ, Wang Z, Zhang Y, Wang W, Dong C, Nature. 2016 Mar 3;531(7592):64-9. doi: 10.1038/nature17199. Epub 2016 Feb 22. PMID:26901871

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (877 Kb) [Save to disk] Biological Unit Coordinates (5d0q.pdb1.gz) 472 Kb Biological Unit Coordinates (5d0q.pdb2.gz) 393 Kb LPC: Ligand-Protein Contacts for 5D0Q CSU: Contacts of Structural Units for 5D0Q Structure Factors (1426 Kb) Retrieve 5D0Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D0Q from S2C, [Save to disk] Re-refined 5d0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D0Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5D0Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d0q_G] [5d0q_C] [5d0q_F] [5d0q_E] [5d0q_A] [5d0q_D] [5d0q_I] [5d0q] [5d0q_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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