5D1K | Ligase | date | Oct 08, 2013 |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
title | Crystal Structure Of Ubch5b In Complex With The Ring-U5br Fr Ao7 | ||||||||||||||
authors | Y.H.Liang, S.Li, A.M.Weissman, X.Ji | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Ubiquitin-Conjugating Enzyme E2 D2 Chain: A Synonym: Ubiquitin Carrier Protein D2,Ubiquitin-Conjugating E2(17)Kb 2,Ubiquitin-Conjugating Enzyme E2-17 Kda 2,Ubiquit Ligase D2,P53-Regulated Ubiquitin-Conjugating Enzyme 1; Ec: 6.3.2.19 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2d2, Pubc1, Ubc4, Ubc5b, Ubch4, Ubch5b Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet | ||||||||||||||
Molecule: E3 Ubiquitin-Protein Ligase Rnf25 Chain: B Fragment: Unp Residues 126-258 Synonym: Ring Finger Protein 25 Ec: 6.3.2.- Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rnf25 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet | ||||||||||||||
symmetry | Space Group: C 1 2 1 |
| |||||||||||||
crystal cell |
| ||||||||||||||
method | X-Ray Diffraction | resolution | 1.78 Å | ||||||||||||
ligand | EDO, OXL, PEG, ZN | enzyme | Ligase E.C.6.3.2.19 BRENDA | ||||||||||||
Gene Ontology |
| ||||||||||||||
Primary reference | Insights into Ubiquitination from the Unique Clamp-like Binding of the RING E3 AO7 to the E2 UbcH5B., Li S, Liang YH, Mariano J, Metzger MB, Stringer DK, Hristova VA, Li J, Randazzo PA, Tsai YC, Ji X, Weissman AM, J Biol Chem. 2015 Dec 18;290(51):30225-39. doi: 10.1074/jbc.M115.685867. Epub, 2015 Oct 16. PMID:26475854 |
Data retrieval |
View 5D1K in 3D |
Visual 3D analysis of 5D1K |
Structure-derived information |
Sequence-derived information |
Other resources with information on 5D1K |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |