5D3M Transport Protein date Aug 06, 2015
title Folate Ecf Transporter: Amppnp Bound State
authors A.Guskov, L.J.Y.M.Swier, D.J.Slotboom
compound source
Molecule: Energy-Coupling Factor Transporter Atp-Binding Pr Ecfa1;
Chain: A, E
Synonym: Ecf Transporter A Component Ecfa1
Ec: 3.6.3.-
Engineered: Yes
Other_details: 10his-Tag With Tev Cleavage Site At N-Termin
Organism_scientific: Lactobacillus Delbrueckii
Organism_taxid: 1584
Gene: Ecfa1, Cbio1, Ldb0424
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Energy-Coupling Factor Transporter Atp-Binding Pr Ecfa2;
Chain: B, F
Synonym: Ecf Transporter A Component Ecfa2
Ec: 3.6.3.-
Engineered: Yes

Organism_scientific: Lactobacillus Delbrueckii
Organism_taxid: 1584
Gene: Ecfa2, Cbio2, Ldb0425
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: S-Component For Folate
Chain: C, G
Engineered: Yes
Other_details: Strepii-Tag At C-Terminus

Organism_scientific: Lactobacillus Delbrueckii
Organism_taxid: 1584
Gene: Ldb1625
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Energy-Coupling Factor Transporter Transmembrane Ecft;
Chain: D, H
Synonym: Ecf Transporter T Component Ecft
Engineered: Yes

Organism_scientific: Lactobacillus Delbrueckii
Organism_taxid: 1584
Gene: Cbiq, Ecft, Lbvib27_01965, Lbvib44_01960, Sb57_06620
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.250 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.070 97.260 105.450 84.67 64.78 62.59
method X-Ray Diffractionresolution 3.30 Å
ligand ANP enzyme Hydrolase E.C.3.6.3 BRENDA
Gene LBVIB27 ; LBVIB44 ; SB57
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G
  • transmembrane transporter ac...


  • F, B


    H, D


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (682 Kb) [Save to disk]
  • Biological Unit Coordinates (5d3m.pdb1.gz) 338 Kb
  • Biological Unit Coordinates (5d3m.pdb2.gz) 337 Kb
  • LPC: Ligand-Protein Contacts for 5D3M
  • CSU: Contacts of Structural Units for 5D3M
  • Structure Factors (343 Kb)
  • Retrieve 5D3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D3M from S2C, [Save to disk]
  • Re-refined 5d3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5D3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5D3M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d3m_H] [5d3m_A] [5d3m_D] [5d3m] [5d3m_C] [5d3m_B] [5d3m_E] [5d3m_F] [5d3m_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5D3M: [AAA ] by SMART
  • Other resources with information on 5D3M
  • Community annotation for 5D3M at PDBWiki (http://pdbwiki.org)

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