5D5D Transport Protein date Aug 10, 2015
title In Meso In Situ Serial X-Ray Crystallography Structure Of Al K
authors P.Ma, C.Y.Huang, V.Olieric, K.Diederichs, M.Wang, M.Caffrey
compound source
Molecule: Alginate Production Protein Alge
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 Pao1 1c Prs 101 Lmg 12228);
Organism_taxid: 208964
Gene: Alge, Alg76, Pa3544
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.330 66.350 176.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 78M, CA, LDA, MES, NA, PE5 enzyme
Primary referenceIn meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures., Huang CY, Olieric V, Ma P, Howe N, Vogeley L, Liu X, Warshamanage R, Weinert T, Panepucci E, Kobilka B, Diederichs K, Wang M, Caffrey M, Acta Crystallogr D Struct Biol. 2016 Jan;72(Pt 1):93-112. doi:, 10.1107/S2059798315021683. Epub 2016 Jan 1. PMID:26894538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (5d5d.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5D5D
  • CSU: Contacts of Structural Units for 5D5D
  • Structure Factors (473 Kb)
  • Retrieve 5D5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D5D from S2C, [Save to disk]
  • Re-refined 5d5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5D5D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d5d_A] [5d5d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5D5D
  • Community annotation for 5D5D at PDBWiki (http://pdbwiki.org)

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