5D91 Membrane Protein date Aug 18, 2015
title Structure Of A Phosphatidylinositolphosphate (Pip) Synthase Renibacterium Salmoninarum
authors O.B.Clarke, D.T.Tomasek, C.D.Jorge, M.Belcher Dufrisne, M.Kim, S. K.R.Rajashankar, W.A.Hendrickson, H.Santos, F.Mancia
compound source
Molecule: Af2299 Protein,Phosphatidylinositol Synthase
Chain: A
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus, Renibacterium Salmoninarum;
Organism_taxid: 224325, 288705
Strain: Atcc 49558 Vc-16 Dsm 4304 Jcm 9628 Nbrc 100 33209 Dsm 20767 Jcm 11484 Nbrc 15589 Ncimb 2235;
Gene: Af_2299, Rsal33209_2010
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.204 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.632 94.069 103.916 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 8K6, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5d91.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 5D91
  • CSU: Contacts of Structural Units for 5D91
  • Structure Factors (866 Kb)
  • Retrieve 5D91 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5D91 from S2C, [Save to disk]
  • Re-refined 5d91 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5D91 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5D91
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5d91_A] [5d91]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5D91
  • Community annotation for 5D91 at PDBWiki (http://pdbwiki.org)

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