5D9K	Transferase Transferase Inhibitor	date	Aug 18, 2015
title	Rsk2 N-Terminal Kinase In Complex With Bi-D1870
authors	B.A.Appleton
compound		source
Molecule: Ribosomal Protein S6 Kinase Alpha-3 Chain: A, B Fragment: N-Terminal Kinase (Unp Residues 39-366) Synonym: S6k-Alpha-3,90 Kda Ribosomal Protein S6 Kinase 3,P Insulin-Stimulated Protein Kinase 1,Ispk-1,Map Kinase-Activ Protein Kinase 1b,Mapkapk-1b,Ribosomal S6 Kinase 2,Rsk-2,Pp Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rps6ka3, Ispk1, Mapkapk1b, Rsk2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.181 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.190 53.710 207.940 90.00 91.75 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	584, GOL	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of Potent and Selective RSK Inhibitors as Biological Probes., Jain R, Mathur M, Lan J, Costales A, Atallah G, Ramurthy S, Subramanian S, Setti L, Feucht P, Warne B, Doyle L, Basham S, Jefferson AB, Lindvall M, Appleton BA, Shafer CM, J Med Chem. 2015 Aug 13. PMID:26270416

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk] Biological Unit Coordinates (5d9k.pdb1.gz) 92 Kb Biological Unit Coordinates (5d9k.pdb2.gz) 94 Kb LPC: Ligand-Protein Contacts for 5D9K CSU: Contacts of Structural Units for 5D9K Structure Factors (238 Kb) Retrieve 5D9K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5D9K from S2C, [Save to disk] Re-refined 5d9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5D9K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5D9K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5d9k_B] [5d9k_A] [5d9k] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5D9K: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 5D9K

Community annotation for 5D9K at PDBWiki (http://pdbwiki.org)

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