5DAH Peptide Binding Protein date Aug 19, 2015
title Crystal Structure Of Pzp Domain Of Human Af10 Protein Fused Histone H3 Peptide
authors S.Chen, D.J.Patel
compound source
Molecule: Protein Af-10
Chain: A, B
Synonym: All1-Fused Gene From Chromosome 10 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mllt10, Af10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H3 Peptide
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.905 79.995 59.287 90.00 102.01 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand SO4, ZN enzyme
Primary referenceThe PZP Domain of AF10 Senses Unmodified H3K27 to Regulate DOT1L-Mediated Methylation of H3K79., Chen S, Yang Z, Wilkinson AW, Deshpande AJ, Sidoli S, Krajewski K, Strahl BD, Garcia BA, Armstrong SA, Patel DJ, Gozani O, Mol Cell. 2015 Oct 15;60(2):319-27. doi: 10.1016/j.molcel.2015.08.019. Epub 2015 , Oct 1. PMID:26439302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (5dah.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5dah.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (5dah.pdb3.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5DAH
  • CSU: Contacts of Structural Units for 5DAH
  • Structure Factors (87 Kb)
  • Retrieve 5DAH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DAH from S2C, [Save to disk]
  • Re-refined 5dah structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DAH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DAH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dah_D] [5dah_A] [5dah_B] [5dah_C] [5dah]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DAH: [PHD ] by SMART
  • Other resources with information on 5DAH
  • Community annotation for 5DAH at PDBWiki (http://pdbwiki.org)

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