5DH3 Transferase Transferase Inhibitor date Aug 29, 2015
title Crystal Structure Of Mst2 In Complex With Xmu-Mp-1
authors L.L.Kong, C.H.Yun
compound source
Molecule: Serinethreonine-Protein Kinase 3
Chain: A, B
Synonym: Mammalian Ste20-Like Protein Kinase 2,Mst-2,Ste20- Kinase Mst2,Serinethreonine-Protein Kinase Krs-1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stk3, Krs1, Mst2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet-28a
symmetry Space Group: C 2 2 21
R_factor 0.211 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.871 98.462 166.771 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.47 Å
ligand 5BS, CL, SO4, TPO enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePharmacological targeting of kinases MST1 and MST2 augments tissue repair and regeneration., Fan F, He Z, Kong LL, Chen Q, Yuan Q, Zhang S, Ye J, Liu H, Sun X, Geng J, Yuan L, Hong L, Xiao C, Zhang W, Sun X, Li Y, Wang P, Huang L, Wu X, Ji Z, Wu Q, Xia NS, Gray NS, Chen L, Yun CH, Deng X, Zhou D, Sci Transl Med. 2016 Aug 17;8(352):352ra108. doi: 10.1126/scitranslmed.aaf2304. PMID:27535619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5dh3.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 5DH3
  • CSU: Contacts of Structural Units for 5DH3
  • Structure Factors (270 Kb)
  • Retrieve 5DH3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DH3 from S2C, [Save to disk]
  • Re-refined 5dh3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DH3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DH3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dh3] [5dh3_B] [5dh3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DH3: [S_TKc ] by SMART
  • Other resources with information on 5DH3
  • Community annotation for 5DH3 at PDBWiki (http://pdbwiki.org)

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