5DHG Signaling Protein date Aug 30, 2015
title The Crystal Structure Of Nociceptinorphanin Fq Peptide Rece In Complex With C-35 (Psi Community Target)
authors R.L.Miller, A.A.Thompson, C.Trapella, R.Guerrini, D.Malfacini, N. G.W.Han, V.Cherezov, G.Calo, V.Katritch, R.C.Stevens, Gpcr Netwo
compound source
Molecule: Soluble Cytochrome B562,Nociceptin Receptor
Chain: A, B
Synonym: Cytochrome B-562,Kappa-Type 3 Opioid Receptor,Kor- Fq Receptor;
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 562, 9606
Strain: O26:H11
Gene: Cybc, Oprl1, Oor, Orl1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_cell_line: Sf9
Expression_system_atcc_number: Crl-1711
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.079 171.696 66.491 90.00 103.25 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand DGV, OLA, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Importance of Ligand-Receptor Conformational Pairs in Stabilization: Spotlight on the N/OFQ G Protein-Coupled Receptor., Miller RL, Thompson AA, Trapella C, Guerrini R, Malfacini D, Patel N, Han GW, Cherezov V, Calo G, Katritch V, Stevens RC, Structure. 2015 Oct 24. pii: S0969-2126(15)00407-4. doi:, 10.1016/j.str.2015.07.024. PMID:26526853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (5dhg.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (5dhg.pdb2.gz) 120 Kb
  • Biological Unit Coordinates (5dhg.pdb3.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 5DHG
  • CSU: Contacts of Structural Units for 5DHG
  • Structure Factors (284 Kb)
  • Retrieve 5DHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DHG from S2C, [Save to disk]
  • Re-refined 5dhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DHG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dhg] [5dhg_A] [5dhg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DHG
  • Community annotation for 5DHG at PDBWiki (http://pdbwiki.org)

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