5DJR	Transferase	date	Sep 02, 2015
title	Crystal Structure Of Human Fpps In Complex With Biaryl Compo
authors	J.M.Rondeau, E.Bourgier, S.Lehmann
compound		source
Molecule: Farnesyl Pyrophosphate Synthase Chain: F Fragment: Residues 6-253 Synonym: Fps,(2e,6e)-Farnesyl Diphosphate Synthase, Dimethylallyltranstransferase,Farnesyl Diphosphate Synthase Geranyltranstransferase; Ec: 2.5.1.10,2.5.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fdps, Fps, Kiaa1293 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Tuner Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 41 21 2	R_factor 0.203 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.320 111.320 77.310 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	5BK, GOL, PO4	enzyme	Transferase E.C.2.5.1.10 BRENDA
Gene Ontology	Chain Function Process Component F
Primary reference	Discovery of Novel Allosteric Non-Bisphosphonate Inhibitors of Farnesyl Pyrophosphate Synthase by Integrated Lead Finding., Marzinzik AL, Amstutz R, Bold G, Bourgier E, Cotesta S, Glickman JF, Gotte M, Henry C, Lehmann S, Hartwieg JC, Ofner S, Pelle X, Roddy TP, Rondeau JM, Stauffer F, Stout SJ, Widmer A, Zimmermann J, Zoller T, Jahnke W, ChemMedChem. 2015 Sep 18. doi: 10.1002/cmdc.201500338. PMID:26381451

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (5djr.pdb1.gz) 242 Kb LPC: Ligand-Protein Contacts for 5DJR CSU: Contacts of Structural Units for 5DJR Structure Factors (162 Kb) Retrieve 5DJR in mmCIF format [Save to disk] Re-refined 5djr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DJR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DJR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5djr_F] [5djr] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5DJR

Community annotation for 5DJR at PDBWiki (http://pdbwiki.org)

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