5DMC	Transcription	date	Sep 08, 2015
title	Crystal Structure Of The Er-Alpha Ligand-Binding Domain In C With A Nitrile-Substituted Triaryl-Ethylene Derivative 3,3- Hydroxyphenyl)-2-Phenylprop-2-Enenitrile
authors	J.C.Nwachukwu, S.Srinivasan, Y.Zheng, S.Wang, J.Min, C.Dong, Z.Lia V.Cavett, J.Nowak, R.Houtman, K.E.Carlson, J.S.Josan, O.Elemento J.A.Katzenellenbogen, H.B.Zhou, K.W.Nettles
compound		source
Molecule: Estrogen Receptor Chain: A, B Fragment: Ligand-Binding Domain Synonym: Er,Er-Alpha,Estradiol Receptor,Nuclear Receptor Su Group A Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Esr1, Esr, Nr3a1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Nuclear Receptor Coactivator 2 Chain: C, D Fragment: Nuclear Receptor-Interacting Peptide Synonym: Ncoa-2,Class E Basic Helix-Loop-Helix Protein 75,B Transcriptional Intermediary Factor 2,Htif2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.510 82.650 58.580 90.00 111.05 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	5DH	enzyme
Primary reference	Predictive features of ligand-specific signaling through the estrogen receptor., Nwachukwu JC, Srinivasan S, Zheng Y, Wang S, Min J, Dong C, Liao Z, Nowak J, Wright NJ, Houtman R, Carlson KE, Josan JS, Elemento O, Katzenellenbogen JA, Zhou HB, Nettles KW, Mol Syst Biol. 2016 Apr 22;12(4):864. doi: 10.15252/msb.20156701. PMID:27107013

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (5dmc.pdb1.gz) 156 Kb LPC: Ligand-Protein Contacts for 5DMC CSU: Contacts of Structural Units for 5DMC Structure Factors (160 Kb) Retrieve 5DMC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DMC from S2C, [Save to disk] Re-refined 5dmc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5DMC

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dmc_C] [5dmc_A] [5dmc_B] [5dmc_D] [5dmc] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DMC: [HOLI ] by SMART

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