5DO7 Transport Protein date Sep 10, 2015
title Crystal Structure Of The Human Sterol Transporter Abcg5abcg
authors J.Y.Lee, L.N.Kinch, D.M.Borek, I.L.Urbatsch, X.S.Xie, N.V.Grish J.C.Cohen, Z.Otwinowski, H.H.Hobbs, D.M.Rosenbaum
compound source
Molecule: Atp-Binding Cassette Sub-Family G Member 5
Chain: A, C
Synonym: Sterolin-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abcg5
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922

Molecule: Atp-Binding Cassette Sub-Family G Member 8
Chain: B, D
Synonym: Sterolin-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abcg8
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: I 2 2 2
R_factor 0.245 R_Free 0.329
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.552 224.804 253.304 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.93 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • intermembrane cholesterol tr...


  • D, B
  • intermembrane cholesterol tr...


  • Primary referenceCrystal structure of the human sterol transporter ABCG5/ABCG8., Lee JY, Kinch LN, Borek DM, Wang J, Wang J, Urbatsch IL, Xie XS, Grishin NV, Cohen JC, Otwinowski Z, Hobbs HH, Rosenbaum DM, Nature. 2016 May 4;533(7604):561-4. doi: 10.1038/nature17666. PMID:27144356
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk]
  • Biological Unit Coordinates (5do7.pdb1.gz) 183 Kb
  • Biological Unit Coordinates (5do7.pdb2.gz) 183 Kb
  • CSU: Contacts of Structural Units for 5DO7
  • Structure Factors (792 Kb)
  • Retrieve 5DO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DO7 from S2C, [Save to disk]
  • Re-refined 5do7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DO7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5do7_C] [5do7_B] [5do7_A] [5do7] [5do7_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5DO7: [AAA ] by SMART
  • Other resources with information on 5DO7
  • Community annotation for 5DO7 at PDBWiki (http://pdbwiki.org)

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