5DPQ Retinol Binding Protein date Sep 14, 2015
title Crystal Structure Of E72a Mutant Of Domain Swapped Dimer Hum Cellular Retinol Binding Protein
authors Z.Assar, Z.Nossoni, W.Wang, J.H.Geiger, B.Borhan
compound source
Molecule: Retinol-Binding Protein 2
Chain: A, B
Synonym: Cellular Retinol-Binding Protein II,Crbp-II
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Dh5a
Gene: Rbp2, Crbp2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.238 72.901 60.487 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDomain-Swapped Dimers of Intracellular Lipid-Binding Proteins: Evidence for Ordered Folding Intermediates., Assar Z, Nossoni Z, Wang W, Santos EM, Kramer K, McCornack C, Vasileiou C, Borhan B, Geiger JH, Structure. 2016 Sep 6;24(9):1590-8. doi: 10.1016/j.str.2016.05.022. Epub 2016 Aug, 11. PMID:27524203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (5dpq.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 5DPQ
  • CSU: Contacts of Structural Units for 5DPQ
  • Structure Factors (391 Kb)
  • Retrieve 5DPQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DPQ from S2C, [Save to disk]
  • Re-refined 5dpq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5DPQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5DPQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dpq_B] [5dpq_A] [5dpq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5DPQ
  • Community annotation for 5DPQ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science