5DPS	Protein Binding	date	Sep 14, 2015
title	Crystal Structure Of Plekhm1 Lir-Fused Human Gabarap_2-117
authors	A.C.Ravichandran, H.Suzuki, R.C.J.Dobson
compound		source
Molecule: Pleckstrin Homology Domain-Containing Family M Me Gamma-Aminobutyric Acid Receptor-Associated Protein; Chain: A, B, C Fragment: Unp Q9y4g2 Residues 627-638, Unp O95166 Residues Synonym: Ph Domain-Containing Family M Member 1,162 Kda Ada Protein,Ap162,Gaba(A) Receptor-Associated Protein,Mm46; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plekhm1, Gabarap, Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_cell_line: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
symmetry	Space Group: P 31	R_factor 0.184 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.806 73.806 74.453 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
Gene Ontology	Chain Function Process Component A, C, B chemical synaptic transmissi...
Primary reference	Structural and functional analysis of the GABARAP interaction motif (GIM)., Rogov VV, Stolz A, Ravichandran AC, Rios-Szwed DO, Suzuki H, Kniss A, Lohr F, Wakatsuki S, Dotsch V, Dikic I, Dobson RC, McEwan DG, EMBO Rep. 2017 Aug;18(8):1382-1396. doi: 10.15252/embr.201643587. Epub 2017 Jun, 27. PMID:28655748

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (5dps.pdb1.gz) 22 Kb Biological Unit Coordinates (5dps.pdb2.gz) 22 Kb Biological Unit Coordinates (5dps.pdb3.gz) 21 Kb CSU: Contacts of Structural Units for 5DPS Structure Factors (535 Kb) Retrieve 5DPS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DPS from S2C, [Save to disk] Re-refined 5dps structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5DPS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dps_B] [5dps_C] [5dps_A] [5dps] SWISS-PROT database: Domain organization of by SWISSPFAM

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