5DQ0	Signaling Protein	date	Sep 14, 2015
title	Structure Of Human Neuropilin-2 B1 Domain With Novel And Uni Binding Site
authors	Y.I.Tsai, R.R.Rana, I.Zachary, S.Djordjevic
compound		source
Molecule: Neuropilin-2 Chain: A Fragment: B1 Domain, Unp Residues 475-430 Synonym: Vascular Endothelial Cell Growth Factor 165 Recept Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nrp2, Vegf165r2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b-Tev
symmetry	Space Group: C 2 2 21	R_factor 0.177 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.390 105.270 45.750 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CL, EDO, MES, ZN	enzyme
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (5dq0.pdb1.gz) 30 Kb LPC: Ligand-Protein Contacts for 5DQ0 CSU: Contacts of Structural Units for 5DQ0 Structure Factors (416 Kb) Retrieve 5DQ0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DQ0 from S2C, [Save to disk] Re-refined 5dq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DQ0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DQ0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dq0_A] [5dq0] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DQ0: [FA58C ] by SMART

Other resources with information on 5DQ0

Community annotation for 5DQ0 at PDBWiki (http://pdbwiki.org)

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