5DWY Membrane Protein date Sep 23, 2015
title Crystal Structure Of A Substrate-Free Glutamate Transporter Glttk
authors A.Guskov, D.J.Slotboom
compound source
Molecule: Protonglutamate Symporter, Sdf Family
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Thermococcus Kodakarensis (Strain Atcc Jcm 12380 Kod1);
Organism_taxid: 69014
Gene: Tk0986
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.198 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.010 116.010 308.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand BOG, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (5dwy.pdb1.gz) 409 Kb
  • LPC: Ligand-Protein Contacts for 5DWY
  • CSU: Contacts of Structural Units for 5DWY
  • Structure Factors (638 Kb)
  • Retrieve 5DWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DWY from S2C, [Save to disk]
  • Re-refined 5dwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DWY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dwy_A] [5dwy_B] [5dwy_C] [5dwy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DWY
  • Community annotation for 5DWY at PDBWiki (http://pdbwiki.org)

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