5DXK	Transcription	date	Sep 23, 2015
title	Crystal Structure Of The Er-Alpha Ligand-Binding Domain In C With The Cyclofenil Derivative 4,4'-[(9s)-Bicyclo[3.3.1]Non Ylmethanediyl]Diphenol
authors	J.C.Nwachukwu, S.Srinivasan, Y.Zheng, S.Wang, J.Min, C.Dong, Z.Lia V.Cavett, J.Nowak, R.Houtman, K.E.Carlson, J.S.Josan, O.Elemento J.A.Katzenellenbogen, H.B.Zhou, K.W.Nettles
compound		source
Molecule: Estrogen Receptor Chain: A, B Fragment: Ligand-Binding Domain Synonym: Er,Er-Alpha,Estradiol Receptor,Nuclear Receptor Su Group A Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Esr1, Esr, Nr3a1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Nuclear Receptor Coactivator 2 Chain: C, D Fragment: Nuclear Receptor-Interacting Peptide Synonym: Ncoa-2,Class E Basic Helix-Loop-Helix Protein 75,B Transcriptional Intermediary Factor 2,Htif2; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.182 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.637 82.538 58.636 90.00 111.05 90.00
method	X-Ray Diffraction	resolution	2.23 Å
ligand	5J1	enzyme
Primary reference	Predictive features of ligand-specific signaling through the estrogen receptor., Nwachukwu JC, Srinivasan S, Zheng Y, Wang S, Min J, Dong C, Liao Z, Nowak J, Wright NJ, Houtman R, Carlson KE, Josan JS, Elemento O, Katzenellenbogen JA, Zhou HB, Nettles KW, Mol Syst Biol. 2016 Apr 22;12(4):864. doi: 10.15252/msb.20156701. PMID:27107013

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (5dxk.pdb1.gz) 163 Kb LPC: Ligand-Protein Contacts for 5DXK CSU: Contacts of Structural Units for 5DXK Structure Factors (186 Kb) Retrieve 5DXK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DXK from S2C, [Save to disk] Re-refined 5dxk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DXK in 3D

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Visual 3D analysis of 5DXK

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dxk] [5dxk_B] [5dxk_C] [5dxk_D] [5dxk_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DXK: [HOLI ] by SMART

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