5DZ5 Toxin date Sep 25, 2015
title Crystal Structure Of Dendroaspis Polylepis Mambalgin-1 Wild- P41212 Space Group
authors E.A.Stura, L.Tepshi, G.Mourier, P.Kessler, D.Servent
compound source
Molecule: Mambalgin-1
Chain: A, B
Synonym: Mamb-1,Pi-Dp1
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Dendroaspis Polylepis Polylepis
Organism_common: Black Mamba
Organism_taxid: 8620
symmetry Space Group: P 41 21 2
R_factor 0.192 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.800 46.800 80.560 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceMambalgin-1 pain-relieving peptide: stepwise solid-phase synthesis, crystal structure and functional domain for acid-sensing ion channel 1a inhibition., Mourier G, Salinas M, Kessler P, Stura EA, Leblanc M, Tepshi L, Besson T, Diochot S, Baron A, Douguet D, Lingueglia E, Servent D, J Biol Chem. 2015 Dec 17. pii: jbc.M115.702373. PMID:26680001
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (5dz5.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 5DZ5
  • Structure Factors (118 Kb)
  • Retrieve 5DZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5DZ5 from S2C, [Save to disk]
  • Re-refined 5dz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5DZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5DZ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5dz5] [5dz5_A] [5dz5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5DZ5
  • Community annotation for 5DZ5 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science