5DZZ
Structural Protein
date
Sep 26, 2015
title
Structural Characterization Of Intermediate Filaments Bindin Of Desmoplakin
authors
H.J.Choi, W.I.Weis
compound
source
Molecule
: Desmoplakin
Chain
: A
Fragment
: Unp Residues 1960-2448
Engineered
: Yes
Organism_scientific
: Homo Sapiens
Organism_common
: Human
Organism_taxid
: 9606
Gene
: Dsp
Expression_system
: Escherichia Coli
Expression_system_taxid
: 562
Expression_system_vector_type
: Plasmid
Expression_system_plasmid
: Pproex-Htb
symmetry
Space Group
: P 21 21 21
R_factor
0.207
R_Free
0.264
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
111.931
64.466
74.044
90.00
90.00
90.00
method
X-Ray Diffraction
resolution
2.60 Å
Gene
Ontology
Chain
Function
Process
Component
A
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(163 Kb)
[Save to disk]
Biological Unit Coordinates
(5dzz.pdb1.gz) 158 Kb
CSU:
Contacts of Structural Units
for 5DZZ
Structure Factors
(132 Kb)
Retrieve 5DZZ in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5DZZ
from
S2C
,
[Save to disk]
Re-refined
5dzz
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 5DZZ in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5DZZ
Ramachandran
plot from
PDBSum
Structure-derived information
Electron Density
related parameters from
EDS
Electron Density Server, at Upsala
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5dzz]
[5dzz_A]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domain
found in 5DZZ:
[PLEC ]
by
SMART
Other resources with information on 5DZZ
Community annotation for
5DZZ
at
PDBWiki
(http://pdbwiki.org)
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