5EKE Transferase date Nov 03, 2015
title Structure Of The Polyisoprenyl-Phosphate Glycosyltransferase (F215a Mutant)
authors C.Ardiccioni, O.B.Clarke, D.Tomasek, S.Banerjee, K.R.Rajashankar L.Shapiro, F.Mancia, New York Consortium On Membrane Protein (Nycomps)
compound source
Molecule: Uncharacterized Glycosyltransferase Sll0501
Chain: A, B, C, D
Ec: 2.4.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Synechocystis Sp. (Strain Pcc 6803 K
Organism_taxid: 1111708
Strain: Pcc 6803 Kazusa
Gene: Sll0501
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.249 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.135 142.243 102.010 90.00 97.16 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand MG, UDP enzyme Transferase E.C.2.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis., Ardiccioni C, Clarke OB, Tomasek D, Issa HA, von Alpen DC, Pond HL, Banerjee S, Rajashankar KR, Liu Q, Guan Z, Li C, Kloss B, Bruni R, Kloppmann E, Rost B, Manzini MC, Shapiro L, Mancia F, Nat Commun. 2016 Jan 5;7:10175. doi: 10.1038/ncomms10175. PMID:26729507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (401 Kb) [Save to disk]
  • Biological Unit Coordinates (5eke.pdb1.gz) 392 Kb
  • LPC: Ligand-Protein Contacts for 5EKE
  • CSU: Contacts of Structural Units for 5EKE
  • Structure Factors (2873 Kb)
  • Retrieve 5EKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EKE from S2C, [Save to disk]
  • Re-refined 5eke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EKE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eke_B] [5eke_C] [5eke_D] [5eke_A] [5eke]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EKE
  • Community annotation for 5EKE at PDBWiki (http://pdbwiki.org)

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