5EMJ	Transferase Transferase Inhibitor	date	Nov 06, 2015
title	Crystal Structure Of Prmt5:Mep50 With Compound 8 And Sinefun
authors	P.A.Boriack-Sjodin, L.Jin
compound		source
Molecule: Protein Arginine N-Methyltransferase 5 Chain: A Synonym: 72 Kda Icln-Binding Protein,Histone-Arginine N- Methyltransferase Prmt5,Jak-Binding Protein 1,Shk1 Kinase-B Protein 1 Homolog,Skb1hs; Ec: 2.1.1.-,2.1.1.125 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Bacmid Expression_system_plasmid: Pdest
Molecule: Methylosome Protein 50 Chain: B Synonym: Mep-50,Androgen Receptor Cofactor P44,Wd Repeat-Co Protein 77,P44mep50; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr77, Mep50, Wd45, Hkmt1069, Nbla10071 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Bacmid Expression_system_plasmid: Pdest
symmetry	Space Group: I 2 2 2	R_factor 0.209 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.240 138.830 179.340 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.27 Å
ligand	5QJ, GOL, SFG	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A transcription corepressor ac... protein-arginine omega-N sym... B ligand-dependent nuclear rec...
Primary reference	Structure and Property Guided Design in the Identification of PRMT5 Tool Compound EPZ015666., Duncan KW, Rioux N, Boriack-Sjodin PA, Munchhof MJ, Reiter LA, Majer CR, Jin L, Johnston LD, Chan-Penebre E, Kuplast KG, Porter Scott M, Pollock RM, Waters NJ, Smith JJ, Moyer MP, Copeland RA, Chesworth R, ACS Med Chem Lett. 2015 Dec 2;7(2):162-6. doi: 10.1021/acsmedchemlett.5b00380., eCollection 2016 Feb 11. PMID:26985292

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (5emj.pdb1.gz) 625 Kb LPC: Ligand-Protein Contacts for 5EMJ CSU: Contacts of Structural Units for 5EMJ Structure Factors (1265 Kb) Retrieve 5EMJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EMJ from S2C, [Save to disk] Re-refined 5emj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EMJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5EMJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5emj_A] [5emj_B] [5emj] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5EMJ: [WD40 ] by SMART

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