5EOA Protein Binding Transferase date Nov 10, 2015
title Crystal Structure Of Optn E50k Mutant And Tbk1 Complex
authors F.Li, X.Xie, J.Liu, L.Pan
compound source
Molecule: Optineurin
Chain: A, B
Fragment: Unp Residues 26-103
Synonym: E3-14.7k-Interacting Protein,Fip-2,Huntingtin Yeas L,Huntingtin-Interacting Protein 7,Hip-7,Huntingtin-Interac Protein L,Nemo-Related Protein,Optic Neuropathy-Inducing Pr Transcription Factor Iiia-Interacting Protein,Tfiiia-Intp;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Optn, Fip2, Glc1e, Hip7, Hypl, Nrp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Serinethreonine-Protein Kinase Tbk1
Chain: C, D
Fragment: Unp Residues 677-729
Synonym: Nf-Kappa-B-Activating Kinase,T2k,Tank-Binding Kina
Ec: 2.7.11.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbk1, Nak
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.824 54.549 153.305 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the interaction and disease mechanism of neurodegenerative disease-associated optineurin and TBK1 proteins., Li F, Xie X, Wang Y, Liu J, Cheng X, Guo Y, Gong Y, Hu S, Pan L, Nat Commun. 2016 Sep 13;7:12708. doi: 10.1038/ncomms12708. PMID:27620379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5eoa.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 5EOA
  • Structure Factors (285 Kb)
  • Retrieve 5EOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EOA from S2C, [Save to disk]
  • Re-refined 5eoa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5EOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5EOA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eoa_A] [5eoa_B] [5eoa_C] [5eoa] [5eoa_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5EOA
  • Community annotation for 5EOA at PDBWiki (http://pdbwiki.org)

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