5EQI Transport Protein Inhibitor date Nov 12, 2015
title Human Glut1 In Complex With Cytochalasin B
authors K.Kapoor, J.Finer-Moore, B.P.Pedersen, L.Caboni, A.B.Waight, R.Hi P.Bringmann, I.Heisler, T.Muller, H.Siebeneicher, R.M.Stroud
compound source
Molecule: Solute Carrier Family 2, Facilitated Glucose Tran Member 1;
Chain: A
Synonym: Glucose Transporter Type 1, Erythrocytebrain, Glu Glucose Transporter;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc2a1, Glut1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932
Expression_system_strain: Dsy-5
symmetry Space Group: C 1 2 1
R_factor 0.247 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.430 102.310 68.073 90.00 100.16 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 5RH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of inhibition of human glucose transporter GLUT1 is conserved between cytochalasin B and phenylalanine amides., Kapoor K, Finer-Moore JS, Pedersen BP, Caboni L, Waight A, Hillig RC, Bringmann P, Heisler I, Muller T, Siebeneicher H, Stroud RM, Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4711-6. doi:, 10.1073/pnas.1603735113. Epub 2016 Apr 12. PMID:27078104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (5eqi.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 5EQI
  • CSU: Contacts of Structural Units for 5EQI
  • Structure Factors (251 Kb)
  • Retrieve 5EQI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EQI from S2C, [Save to disk]
  • Re-refined 5eqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EQI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EQI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5eqi_A] [5eqi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5EQI
  • Community annotation for 5EQI at PDBWiki (http://pdbwiki.org)

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