5F09 Hydrolase date Nov 27, 2015
title Structure Of Inactive Gcpii Mutant In Complex With Beta-Citr Glutamate
authors J.Tykvart, M.Navratil, P.Pachl, J.Konvalinka
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Synonym: Cell Growth-Inhibiting Gene 27 Protein,Folate Hydr Folylpoly-Gamma-Glutamate Carboxypeptidase,Fgcp,Glutamate Carboxypeptidase II,Gcpii,Membrane Glutamate Carboxypeptida Acetylated-Alpha-Linked Acidic Dipeptidase I,Naaladase I,Pr Specific Membrane Antigen,Psma,Pteroylpoly-Gamma-Glutamate Carboxypeptidase;
Ec: 3.4.17.21
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Folh1, Folh, Naalad1, Psm, Psma, Gig27
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_cell_line: S2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbipavitevrhgcpiii(E424a)
symmetry Space Group: I 2 2 2
R_factor 0.155 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.901 130.923 159.136 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand BC8, BMA, CA, CL, MAN, NAG, PGE, ZN enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComparison of human glutamate carboxypeptidases II and III reveals their divergent substrate specificities., Navratil M, Tykvart J, Schimer J, Pachl P, Navratil V, Rokob TA, Hlouchova K, Rulisek L, Konvalinka J, FEBS J. 2016 May 21. doi: 10.1111/febs.13761. PMID:27208881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (5f09.pdb1.gz) 496 Kb
  • LPC: Ligand-Protein Contacts for 5F09
  • CSU: Contacts of Structural Units for 5F09
  • Structure Factors (1896 Kb)
  • Retrieve 5F09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F09 from S2C, [Save to disk]
  • Re-refined 5f09 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 5F09
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f09] [5f09_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5F09
  • Community annotation for 5F09 at PDBWiki (http://pdbwiki.org)

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