5F2E	Hydrolase	date	Dec 01, 2015
title	Crystal Structure Of Small Molecule Ars-853 Covalently Bound G12c
authors	M.P.Patricelli, M.R.Janes, L.S.Li, R.Hansen, U.Peters, L.V.Kessl Y.Chen, J.M.Kucharski, J.Feng, T.Ely, J.H.Chen, S.J.Firdaus, A.Ba P.Ren, Y.Liu
compound		source
Molecule: Gtpase Kras Chain: A Fragment: Gtpase Domain Synonym: K-Ras 2,Ki-Ras,C-K-Ras,C-Ki-Ras Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kras, Kras2, Rask2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pjexpress411
symmetry	Space Group: P 21 21 21	R_factor 0.150 R_Free 0.176
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.110 43.080 93.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	5UT, GDP, GLY, GOL, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Selective Inhibition of Oncogenic KRAS Output with Small Molecules Targeting the Inactive State., Patricelli MP, Janes MR, Li LS, Hansen R, Peters U, Kessler LV, Chen Y, Kucharski JM, Feng J, Ely T, Chen JH, Firdaus SJ, Babbar A, Ren P, Liu Y, Cancer Discov. 2016 Mar;6(3):316-29. doi: 10.1158/2159-8290.CD-15-1105. Epub 2016, Jan 6. PMID:26739882

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (5f2e.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 5F2E CSU: Contacts of Structural Units for 5F2E Structure Factors (668 Kb) Retrieve 5F2E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F2E from S2C, [Save to disk] Re-refined 5f2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5F2E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5F2E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f2e_A] [5f2e] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5F2E: [RAS ] by SMART

Other resources with information on 5F2E

Community annotation for 5F2E at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---