5F58 Transport Protein date Dec 04, 2015
title Crystal Structure Of The Q108k:K40l:T51v:R58f Mutant Of Huma Retinol Binding Protein II In Complex With All-Trans-Retina Hours Of Incubation At 1.54 Angstrom Resolution
authors M.Nosrati, Z.Nossoni, J.H.Geiger
compound source
Molecule: Retinol-Binding Protein 2
Chain: A, B
Synonym: Cellular Retinol-Binding Protein II,Crbp-II
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbp2, Crbp2
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.234 35.704 64.104 91.28 90.91 114.19
method X-Ray Diffractionresolution 1.54 Å
ligand ACT, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5f58.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (5f58.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5F58
  • CSU: Contacts of Structural Units for 5F58
  • Structure Factors (695 Kb)
  • Retrieve 5F58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5F58 from S2C, [Save to disk]
  • Re-refined 5f58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f58] [5f58_A] [5f58_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5F58
  • Community annotation for 5F58 at PDBWiki (http://pdbwiki.org)

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