5F85	Transferase Hydrolase	date	Dec 09, 2015
title	Crystal Structure Of Drosophila Poglut1 (Rumi) Complexed Wit Substrate Protein (Egf Repeat) And Udp
authors	H.J.Yu, H.L.Li
compound		source
Molecule: O-Glucosyltransferase Rumi Chain: A Fragment: Unp Residues 21-407 Ec: 2.4.1.- Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Rumi, Cg31152 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Coagulation Factor Ix Chain: B Fragment: Unp Residues 92-130 Synonym: Christmas Factor,Plasma Thromboplastin Component,P Ec: 3.4.21.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F9 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: H 3 2	R_factor 0.211 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 269.829 269.829 47.280 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	GOL, SO4, UDP	enzyme	Transferase E.C.2.4.1 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural analysis of Notch-regulating Rumi reveals basis for pathogenic mutations., Yu H, Takeuchi H, Takeuchi M, Liu Q, Kantharia J, Haltiwanger RS, Li H, Nat Chem Biol. 2016 Sep;12(9):735-40. doi: 10.1038/nchembio.2135. Epub 2016 Jul, 18. PMID:27428513

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (5f85.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 5F85 CSU: Contacts of Structural Units for 5F85 Structure Factors (591 Kb) Retrieve 5F85 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F85 from S2C, [Save to disk] Re-refined 5f85 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5F85

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f85] [5f85_B] [5f85_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5F85: [CAP10] [EGF_CA ] by SMART

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