5FA5	Transferase Protein Binding	date	Dec 10, 2015
title	Crystal Structure Of Prmt5:Mep50 In Complex With Mta And H4
authors	E.R.Sprague, J.T.Mcnamara
compound		source
Molecule: Protein Arginine N-Methyltransferase 5 Chain: A Synonym: 72 Kda Icln-Binding Protein,Histone-Arginine N- Methyltransferase Prmt5,Jak-Binding Protein 1,Shk1 Kinase-B Protein 1 Homolog,Skb1hs; Ec: 2.1.1.-,2.1.1.125 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prmt5, Hrmt1l5, Ibp72, Jbp1, Skb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf21
Molecule: Methylosome Protein 50 Chain: B Synonym: Mep-50,Androgen Receptor Cofactor P44,Wd Repeat-Co Protein 77,P44mep50; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr77, Mep50, Wd45, Hkmt1069, Nbla10071 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf21
Molecule: Histone H4 Chain: C Fragment: Dna Binding Residues 2-21 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.177 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.050 137.850 178.430 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.34 Å
ligand	MTA	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A transcription corepressor ac... protein-arginine omega-N sym... B ligand-dependent nuclear rec... C
Primary reference	Disordered methionine metabolism in MTAP/CDKN2A deleted cancers leads to dependence on PRMT5., Mavrakis KJ, McDonald ER 3rd, Schlabach MR, Billy E, Hoffman GR, deWeck A, Ruddy DA, Venkatesan K, Yu J, McAllister G, Stump M, deBeaumont R, Ho S, Yue Y, Liu Y, Yan-Neale Y, Yang G, Lin F, Yin H, Gao H, Kipp DR, Zhao S, McNamara JT, Sprague ER, Zheng B, Lin Y, Cho YS, Gu J, Crawford K, Ciccone D, Vitari AC, Lai A, Capka V, Hurov K, Porter JA, Tallarico J, Mickanin C, Lees E, Pagliarini R, Keen N, Schmelzle T, Hofmann F, Stegmeier F, Sellers WR, Science. 2016 Feb 11. pii: aad5944. PMID:26912361

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk] Biological Unit Coordinates (5fa5.pdb1.gz) 1216 Kb Biological Unit Coordinates (5fa5.pdb2.gz) 610 Kb Biological Unit Coordinates (5fa5.pdb3.gz) 610 Kb Biological Unit Coordinates (5fa5.pdb4.gz) 307 Kb LPC: Ligand-Protein Contacts for 5FA5 CSU: Contacts of Structural Units for 5FA5 Structure Factors (3557 Kb) Retrieve 5FA5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FA5 from S2C, [Save to disk] Re-refined 5fa5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FA5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FA5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fa5] [5fa5_B] [5fa5_A] [5fa5_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5FA5: [WD40 ] by SMART

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