5FB0	Transcription Structural Protein	date	Dec 13, 2015
title	Crystal Structure Of A Phd Finger Bound To Histone H3 T3ph P
authors	H.Li, X.Zhang
compound		source
Molecule: Nuclear Autoantigen Sp-100 Chain: A, C Fragment: Unp Residues 696-878 Synonym: Sp100 Nuclear Antigen Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sp100 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
Molecule: Peptide From Histone H3 Chain: D, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Chemically Synthesized H3 Peptide 1-15 With Modification
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.830 99.160 53.716 90.00 93.17 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	TPO, ZN	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	Multifaceted Histone H3 Methylation and Phosphorylation Readout by the Plant Homeodomain Finger of Human Nuclear Antigen Sp100C., Zhang X, Zhao D, Xiong X, He Z, Li H, J Biol Chem. 2016 Jun 10;291(24):12786-98. doi: 10.1074/jbc.M116.721159. Epub, 2016 Apr 22. PMID:27129259

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (5fb0.pdb1.gz) 65 Kb Biological Unit Coordinates (5fb0.pdb2.gz) 64 Kb LPC: Ligand-Protein Contacts for 5FB0 CSU: Contacts of Structural Units for 5FB0 Structure Factors (203 Kb) Retrieve 5FB0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5FB0 from S2C, [Save to disk] Re-refined 5fb0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5FB0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5FB0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5fb0] [5fb0_C] [5fb0_D] [5fb0_A] [5fb0_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5FB0: [BROMO] [PHD ] by SMART

Other resources with information on 5FB0

Community annotation for 5FB0 at PDBWiki (http://pdbwiki.org)

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