5FB7 Lipid Binding Protein date Dec 14, 2015
title Ligand Binding Domain 2 Of Penicillium Marneffei Mp1 Protein With Multiple Arachidonic Acids
authors W.H.Lam, H.Zhang, Q.Hao
compound source
Molecule: Envelope Glycoprotein
Chain: A, B, C, D
Fragment: Unp Residues 188-342
Engineered: Yes
Organism_scientific: Talaromyces Marneffei Pm1
Organism_taxid: 1077442
Gene: Gq26_0022220
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: His-Sumo
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.239 98.495 100.120 90.00 90.01 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACD enzyme
Gene GQ26
Primary referenceTalaromyces marneffei Mp1p Is a Virulence Factor that Binds and Sequesters a Key Proinflammatory Lipid to Dampen Host Innate Immune Response., Sze KH, Lam WH, Zhang H, Ke YH, Tse MK, Woo PC, Lau SK, Lau CC, Cai JP, Tung ET, Lo RK, Xu S, Kao RY, Hao Q, Yuen KY, Cell Chem Biol. 2017 Feb 16;24(2):182-194. doi: 10.1016/j.chembiol.2016.12.014., Epub 2017 Jan 19. PMID:28111099
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (5fb7.pdb1.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 5FB7
  • CSU: Contacts of Structural Units for 5FB7
  • Structure Factors (1607 Kb)
  • Retrieve 5FB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FB7 from S2C, [Save to disk]
  • Re-refined 5fb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FB7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fb7] [5fb7_D] [5fb7_B] [5fb7_C] [5fb7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FB7
  • Community annotation for 5FB7 at PDBWiki (http://pdbwiki.org)

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