5FI0 Protein Binding date Dec 22, 2015
title Crystal Structure Of The P-Rex1 Dhph Tandem In Complex With
authors J.N.Cash, J.J.G.Tesmer
compound source
Molecule: Phosphatidylinositol 3,4,5-Trisphosphate-Dependen Exchanger 1 Protein,Phosphatidylinositol 3,4,5-Trisphosphat Dependent Rac Exchanger 1 Protein;
Chain: A, C, E, G
Synonym: Ptdins(3,4,5)-Dependent Rac Exchanger 1,Ptdins(3,4 Dependent Rac Exchanger 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prex1, Kiaa1415
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalc2h10t

Molecule: Ras-Related C3 Botulinum Toxin Substrate 1
Chain: B, D, F, H
Synonym: Cell Migration-Inducing Gene 5 Protein,Ras-Like Pr Tc25,P21-Rac1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rac1, Tc25, Mig5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalc2h10t
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.373 107.053 323.568 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.28 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceStructural and Biochemical Characterization of the Catalytic Core of the Metastatic Factor P-Rex1 and Its Regulation by PtdIns(3,4,5)P3., Cash JN, Davis EM, Tesmer JJ, Structure. 2016 May 3;24(5):730-40. doi: 10.1016/j.str.2016.02.022. Epub 2016 Apr, 14. PMID:27150042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (712 Kb) [Save to disk]
  • Biological Unit Coordinates (5fi0.pdb1.gz) 177 Kb
  • Biological Unit Coordinates (5fi0.pdb2.gz) 179 Kb
  • Biological Unit Coordinates (5fi0.pdb3.gz) 180 Kb
  • Biological Unit Coordinates (5fi0.pdb4.gz) 182 Kb
  • LPC: Ligand-Protein Contacts for 5FI0
  • CSU: Contacts of Structural Units for 5FI0
  • Structure Factors (709 Kb)
  • Retrieve 5FI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FI0 from S2C, [Save to disk]
  • Re-refined 5fi0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FI0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fi0_C] [5fi0_F] [5fi0] [5fi0_G] [5fi0_B] [5fi0_D] [5fi0_H] [5fi0_E] [5fi0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FI0: [PH] [RHO] [RhoGEF ] by SMART
  • Other resources with information on 5FI0
  • Community annotation for 5FI0 at PDBWiki (http://pdbwiki.org)

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