5FI4 Transferase Transferase Inhibitor date Dec 22, 2015
title Discovery Of Imidazo[1,2-A]-Pyridine Inhibitors Of Pan-Pi3 K That Are Efficacious In A Mouse Xenograft Model
authors R.A.Elling, M.S.Knapp, W.Han, L.M.Daniel, Y.Xy, M.T.Burger, Z.Ni, A J.Lan, T.Williams, J.Verhagen, K.Huh, H.Merritt, J.Chan, S.Kaufma C.F.Voliva, S.Pecchi
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Alpha Isoform;
Chain: A
Synonym: Ptdins-3-Kinase Subunit Alpha,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Alpha,P110a Phosphoinositide-3-Kinase Catalytic Alpha Polypeptide, Serinethreonine Protein Kinase Pik3ca;
Ec: 2.7.1.153,2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3ca
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Phosphatidylinositol 3-Kinase Regulatory Subunit
Chain: B
Fragment: Unp Residues 2-317
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3r1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.200 105.320 134.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 5XV, GOL enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein serine/threonine kin...
  • protein kinase activator act...


  • Primary referenceDiscovery of imidazo[1,2-a]-pyridine inhibitors of pan-PI3 kinases that are efficacious in a mouse xenograft model., Han W, Menezes DL, Xu Y, Knapp MS, Elling R, Burger MT, Ni ZJ, Smith A, Lan J, Williams TE, Verhagen J, Huh K, Merritt H, Chan J, Kaufman S, Voliva CF, Pecchi S, Bioorg Med Chem Lett. 2016 Feb 1;26(3):742-6. doi: 10.1016/j.bmcl.2016.01.003., Epub 2016 Jan 5. PMID:26774655
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk]
  • Biological Unit Coordinates (5fi4.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 5FI4
  • CSU: Contacts of Structural Units for 5FI4
  • Structure Factors (1458 Kb)
  • Retrieve 5FI4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FI4 from S2C, [Save to disk]
  • Re-refined 5fi4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FI4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FI4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fi4] [5fi4_B] [5fi4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FI4: [C2] [PI3K_C2] [PI3K_p85B] [PI3K_rbd] [PI3Ka] [PI3Kc] [SH2 ] by SMART
  • Other resources with information on 5FI4
  • Community annotation for 5FI4 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science