5FI6 Hydrolase Hydrolase Inhibitor date Dec 22, 2015
title Crystal Structure Of Human Gac In Complex With Inhibitor Upg 2-Phenyl-~{N}-[5-[[(3~{S})-1-[5-(2-Phenylethanoylamino)-1,3 Thiadiazol-2-Yl]Pyrrolidin-3-Yl]Amino]-1,3,4-Thiadiazol-2- Yl]Ethanamide
authors Q.Huang, R.Cerione
compound source
Molecule: Glutaminase Kidney Isoform, Mitochondrial
Chain: A, B, C, D
Synonym: Gls,K-Glutaminase,L-Glutamine Amidohydrolase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.692 139.031 176.783 90.00 95.56 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand 5XY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDesign and evaluation of novel glutaminase inhibitors., McDermott LA, Iyer P, Vernetti L, Rimer S, Sun J, Boby M, Yang T, Fioravanti M, O'Neill J, Wang L, Drakes D, Katt W, Huang Q, Cerione R, Bioorg Med Chem. 2016 Apr 15;24(8):1819-39. doi: 10.1016/j.bmc.2016.03.009. Epub , 2016 Mar 7. PMID:26988803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]
  • Biological Unit Coordinates (5fi6.pdb1.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 5FI6
  • CSU: Contacts of Structural Units for 5FI6
  • Structure Factors (1029 Kb)
  • Retrieve 5FI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FI6 from S2C, [Save to disk]
  • Re-refined 5fi6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FI6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fi6_C] [5fi6_A] [5fi6_D] [5fi6_B] [5fi6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FI6
  • Community annotation for 5FI6 at PDBWiki (http://pdbwiki.org)

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