5FIW Oxidoreductase date Oct 02, 2015
title Crystal Structure Of Human Myeloperoxidase At 1.7 Angstroms
authors L.Bonnefond, J.Cavarelli
compound source
Molecule: Myeloperoxidase
Chain: A, B
Fragment: Unp Residues 167-271
Synonym: Mpo
Ec: 1.11.2.2
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophils

Molecule: Myeloperoxidase
Chain: C, D
Fragment: Unp Residues 279-744
Synonym: Mpo
Ec: 1.11.2.2

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophils
symmetry Space Group: P 43 21 2
R_factor 0.163 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.160 105.160 225.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BMA, CA, CL, CSO, FUC, HEM, MAN, NAG enzyme Oxidoreductase E.C.1.11.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (5fiw.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (5fiw.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 5FIW
  • CSU: Contacts of Structural Units for 5FIW
  • Structure Factors (1483 Kb)
  • Retrieve 5FIW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FIW from S2C, [Save to disk]
  • Re-refined 5fiw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FIW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FIW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fiw_A] [5fiw_B] [5fiw] [5fiw_D] [5fiw_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FIW
  • Community annotation for 5FIW at PDBWiki (http://pdbwiki.org)

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