5FP2 Metal Transport date Nov 27, 2015
title Crystal Structure Of The Siderophore Receptor Pira From Pseu Aeruginosa
authors L.Moynie, A.Tortajada, J.H.Naismith
compound source
Molecule: Ferric Enterobactin Receptor Pira
Chain: A, B
Synonym: Iron Transport Outer Membrane Receptor
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet20b

Molecule: Ferric Enterobactin Receptor Pira
Chain: X, Z
Synonym: Iron Transport Outer Membrane Receptor
Engineered: Yes
Other_details: Peptide Thought Part Of The Main Protein Cha Cannot Be Confirmed.

Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet20b
symmetry Space Group: C 1 2 1
R_factor 0.263 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.120 95.280 131.830 90.00 127.52 90.00
method X-Ray Diffractionresolution 2.97 Å
ligand OCT, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and Function of the PiuA and PirA Siderophore-Drug Receptors from Pseudomonas aeruginosa and Acinetobacter baumannii., Moynie L, Luscher A, Rolo D, Pletzer D, Tortajada A, Weingart H, Braun Y, Page MG, Naismith JH, Kohler T, Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e02531-16. doi:, 10.1128/AAC.02531-16. Print 2017 Apr. PMID:28137795
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk]
  • Biological Unit Coordinates (5fp2.pdb1.gz) 167 Kb
  • Biological Unit Coordinates (5fp2.pdb2.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 5FP2
  • CSU: Contacts of Structural Units for 5FP2
  • Structure Factors (1998 Kb)
  • Retrieve 5FP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FP2 from S2C, [Save to disk]
  • Re-refined 5fp2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FP2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fp2_X] [5fp2_B] [5fp2] [5fp2_A] [5fp2_Z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FP2
  • Community annotation for 5FP2 at PDBWiki (http://pdbwiki.org)

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