5FQ6 Membrane Protein date Dec 07, 2015
title Crystal Structure Of The Suscd Complex Bt2261-2264 From Bact Thetaiotaomicron
authors A.J.Glenwright, K.R.Pothula, D.S.Chorev, A.Basle, C.V.Robinson, U.Kleinekathoefer, D.N.Bolam, B.Van Den Berg
compound source
Molecule: Putative Lipoprotein
Chain: A, C, H, L
Other_details: Outer Membrane Lipoprotein
Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818

Molecule: Suscraga Family Tonb-Linked Outer Membrane Prote
Chain: B, D, I, M
Other_details: Tonb Dependent Transporter

Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818

Molecule: Uncharacterized Protein
Chain: E, F, J, N
Other_details: Outer Membrane Lipoprotein

Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818

Molecule: Bt_2261
Chain: G, K, O, P
Other_details: Outer Membrane Lipoprotein

Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
222.027 91.941 261.219 90.00 98.23 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA, KR0, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, A, C, L


M, D, I, B


Primary referenceStructural basis for nutrient acquisition by dominant members of the human gut microbiota., Glenwright AJ, Pothula KR, Bhamidimarri SP, Chorev DS, Basle A, Firbank SJ, Zheng H, Robinson CV, Winterhalter M, Kleinekathofer U, Bolam DN, van den Berg B, Nature. 2017 Jan 19;541(7637):407-411. doi: 10.1038/nature20828. Epub 2017 Jan, 11. PMID:28077872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2047 Kb) [Save to disk]
  • Biological Unit Coordinates (5fq6.pdb1.gz) 1027 Kb
  • Biological Unit Coordinates (5fq6.pdb2.gz) 1021 Kb
  • LPC: Ligand-Protein Contacts for 5FQ6
  • CSU: Contacts of Structural Units for 5FQ6
  • Structure Factors (2724 Kb)
  • Retrieve 5FQ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FQ6 from S2C, [Save to disk]
  • Re-refined 5fq6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FQ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FQ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fq6_F] [5fq6_B] [5fq6_I] [5fq6_A] [5fq6_P] [5fq6_H] [5fq6_G] [5fq6_O] [5fq6_L] [5fq6_N] [5fq6_D] [5fq6] [5fq6_C] [5fq6_K] [5fq6_E] [5fq6_M] [5fq6_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FQ6
  • Community annotation for 5FQ6 at PDBWiki (http://pdbwiki.org)

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