5FQU Transport Protein date Dec 14, 2015
title Orthorhombic Crystal Structure Of Of Plpd (Selenomethionine Derivative)
authors P.Vinicius Da Mata Madeira, S.Zouhir, P.Basso, D.Neves, A.Laubie R.Salacha, S.Bleves, E.Faudry, C.Contreras-Martel, A.Dessen
compound source
Molecule: Patatin-Like Protein, Plpd
Chain: A, B
Fragment: Passenger Domain, Unp Residues 20-333
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.743 113.393 130.416 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.74 Å
ligand AZI, MSE, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis of Lipid Targeting and Destruction by the Type V Secretion System of Pseudomonas aeruginosa., da Mata Madeira PV, Zouhir S, Basso P, Neves D, Laubier A, Salacha R, Bleves S, Faudry E, Contreras-Martel C, Dessen A, J Mol Biol. 2016 May 8;428(9 Pt A):1790-803. doi: 10.1016/j.jmb.2016.03.012. Epub, 2016 Mar 21. PMID:27012424
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5fqu.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5FQU
  • CSU: Contacts of Structural Units for 5FQU
  • Structure Factors (596 Kb)
  • Retrieve 5FQU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FQU from S2C, [Save to disk]
  • Re-refined 5fqu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FQU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FQU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fqu_A] [5fqu] [5fqu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FQU
  • Community annotation for 5FQU at PDBWiki (http://pdbwiki.org)

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