5FR8 Transport Protein date Dec 16, 2015
title Crystal Structure Of The Siderophore Receptor Pira From Acin Baumannii
authors L.Moynie, A.Tortajada, J.H.Naismith
compound source
Molecule: Tonb-Dependent Siderophore Receptor
Chain: A, B
Synonym: Iron Transport Outer Membrane Receptor
Engineered: Yes
Organism_scientific: Acinetobacter Baumannii
Organism_taxid: 470
Atcc: 19606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C43
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptamahistev
symmetry Space Group: P 32 2 1
R_factor 0.227 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.090 99.090 504.370 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.83 Å
ligand C8E enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • siderophore uptake transmemb...


  • Primary referenceStructure and Function of the PiuA and PirA Siderophore-Drug Receptors from Pseudomonas aeruginosa and Acinetobacter baumannii., Moynie L, Luscher A, Rolo D, Pletzer D, Tortajada A, Weingart H, Braun Y, Page MG, Naismith JH, Kohler T, Antimicrob Agents Chemother. 2017 Mar 24;61(4). pii: e02531-16. doi:, 10.1128/AAC.02531-16. Print 2017 Apr. PMID:28137795
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (5fr8.pdb1.gz) 230 Kb
  • Biological Unit Coordinates (5fr8.pdb2.gz) 231 Kb
  • LPC: Ligand-Protein Contacts for 5FR8
  • CSU: Contacts of Structural Units for 5FR8
  • Structure Factors (3402 Kb)
  • Retrieve 5FR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FR8 from S2C, [Save to disk]
  • Re-refined 5fr8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FR8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fr8_B] [5fr8] [5fr8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FR8
  • Community annotation for 5FR8 at PDBWiki (http://pdbwiki.org)

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