5FV7 Hydrolase date Feb 03, 2016
title Human Fen1 In Complex With An N-Hydroxyurea Compound
authors J.C.Exell, M.J.Thompson, L.D.Finger, S.K.Shaw, W.M.Abbott, C.Mcwh J.E.Debreczeni, C.D.Jones, J.W.M.Nissink, T.A.Ward, C.W.L.Siobe D.M.Molina, S.T.Durant, J.A.Grasby
compound source
Molecule: Flap Endonuclease 1
Chain: A, B
Fragment: Residues 1-336
Synonym: Fen-1, Dnase Iv, Flap Structure-Specific Endonucle Maturation Factor 1, Mf1, Hfen-1;
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1
R_factor 0.234 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.339 50.193 66.945 102.06 94.01 90.74
method X-Ray Diffractionresolution 2.84 Å
ligand MG, R3Z enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCellularly active N-hydroxyurea FEN1 inhibitors block substrate entry to the active site., Exell JC, Thompson MJ, Finger LD, Shaw SJ, Debreczeni J, Ward TA, McWhirter C, Sioberg CL, Molina DM, Abbott WM, Jones CD, Nissink JW, Durant ST, Grasby JA, Nat Chem Biol. 2016 Aug 15. doi: 10.1038/nchembio.2148. PMID:27526030
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (5fv7.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (5fv7.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5FV7
  • CSU: Contacts of Structural Units for 5FV7
  • Structure Factors (230 Kb)
  • Retrieve 5FV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FV7 from S2C, [Save to disk]
  • Re-refined 5fv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FV7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fv7] [5fv7_B] [5fv7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5FV7: [HhH2] [XPGI] [XPGN ] by SMART
  • Other resources with information on 5FV7
  • Community annotation for 5FV7 at PDBWiki (http://pdbwiki.org)

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