5FVN X-ray crystal structure of Enterobacter cloacae OmpE36 porin date
authors Arunmanee, W., Pathania, M., Soloyova, A., Brun, A., Ridley, H., Basle, A., Berg, B.van.den., Lakey, J.H.
compound source
symmetry
R_factor
R_Free 0.18308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand C8E, CA, DAO, FTT, GMH, GP1, KDO, MYR, PO4, SO4, Z9M enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceGram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis., Arunmanee W, Pathania M, Solovyova AS, Le Brun AP, Ridley H, Basle A, van den Berg B, Lakey JH, Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):E5034-43. doi:, 10.1073/pnas.1602382113. Epub 2016 Aug 4. PMID:27493217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (797 Kb) [Save to disk]
  • Biological Unit Coordinates (5fvn.pdb1.gz) 392 Kb
  • Biological Unit Coordinates (5fvn.pdb2.gz) 392 Kb
  • LPC: Ligand-Protein Contacts for 5FVN
  • CSU: Contacts of Structural Units for 5FVN
  • Structure Factors (29845 Kb)
  • Retrieve 5FVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5FVN from S2C, [Save to disk]
  • Re-refined 5fvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5FVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5FVN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5fvn] [5fvn_C] [5fvn_A] [5fvn_D] [5fvn_F] [5fvn_B] [5fvn_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5FVN
  • Community annotation for 5FVN at PDBWiki (http://pdbwiki.org)

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